Publications

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# Co-first authors; * Co-corresponding authors

2020

  • Sun D#, Wang J#, Han Y#, Dong X, Zheng R, Ge J, Shi X, Wang B, Ren P, Sun L, Yan Y, Zhang P, Zhang F*, Li T*, Wang C*. TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment. Nucleic Acids Res 2020 Nov 12:gkaa1020.
    [Abstract] [Full Paper]
  • Wang C#, Sun D#, Huang X, Wan C, Li Z, Han Y, Qin Q, Fan J, Qiu X, Xie Y, Meyer CA, Brown M, Tang M, Long H, Liu T*, Liu XS*. Integrative analyses of single-cell transcriptome and regulome using MAESTRO. Genome Biol 2020 Aug 7;21(1):198.
    [Abstract] [Full Paper]
  • Burton A, Brochard V, Galan C, Ruiz-Morales E, Rovira Q, Rodriguez-Terrones D, Kruse K, Gras S, Udayakumar V, Chin H, Eid A, Liu X, Wang C, Gao S, Pradhan S, Vaquerizas J, Beaujean N, Jenuwein T, Torres-Padilla M. Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3. Nat Cell Biol 2020; 22:767-778.
    [Abstract] [Full Paper]
  • Wu SZ#, Roden D#, Wang C, Holliday H, Harvery K, Cazet AS, Murphy KJ, Pereira B, Al-Eryani G, Bartonicek N, Hou R, Torpy JR, Junankar S, Chan C, Lam CE, Hui M, Gluch L, Beith J, Parker A, Robbins E, Segara D, Mark C, Cooper C, Warrier S, Forrest A, Powell J, O’Toole S, Cox TR, Timpson P, Lim E, Liu XS, Swarbrick A*. Stromal cell diversity associated with immune evasion in human triple-negative breast cancer. EMBO J 2020. e104063.
    [Abstract] [Full Paper]

Before 2020

  • Wang C#, Liu X#, Gao Y#*, Yang L#, Li C, Liu W, Chen C, Kou X, Zhao Y, Chen J, Wang Y, Le R, Wang H, Duan T, Zhang Y*, Gao S*. Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development. Nat Cell Biol 2018; 20:620-631.
    [Abstract] [Full Paper]
  • Gao R#, Wang C#, Gao Y#, Bai D, Liu X, Kou X, Zhao Y, Zang R, Liao Y, Jia Y, Chen J, Wang H, Wan X, Liu W*, Zhang Y*, Gao S$*. Inhibition of aberrant DNA re-methylation improves the development of nuclear transfer embryos. Cell Stem Cell 2018; 23:426-435.
    [Abstract] [Full Paper]
  • Gao R#, Xiu W#, Zhang L, Zang R, Yang L, Wang C, Wang M, Wang M, Yi L, Tang Y, Gao Y, Wang H, Xi J, Liu W, Wang Y, Wen X, Yu Y, Zhang Y, Chen L, Chen J*, Gao S*. Direct induction of neural progenitor cells transiently passes through a partially reprogrammed state. Biomaterials 2017; 119:53-67.
    [Abstract] [Full Paper]
  • Liu X#, Wang C#, Liu W#, Li J#, Li C, Kou X, Chen J, Zhao Y, Gao H, Wang H, Zhang Y*, Gao Y*, Gao S*. Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos. Nature 2016; 537(7621):558-562.
    [Abstract] [Full Paper]
  • Liu W#, Liu X#, Wang C#, Gao Y#, Gao R, Kou X, Zhao Y, Li J, Wu Y, Xiu W, Wang S, Yin J, Liu W, Cai T, Wang H, Zhang Y*, Gao S*. Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing. Cell Discov 2016; 2:16010.
    [Abstract] [Full Paper]
  • Xu K#, Chen X#, Yang H, Xu Y, He Y, Wang C, Huang H, Liu B, Liu W, Li J, Kou X, Zhao Y, Zhao K, Zhang L, Hou Z, Wang H, Wang H, Li J, Fan H, Wang F, Gao Y, Zhang Y, Chen J*, Gao S*. Maternal Sall4 is indispensable for epigenetic maturation of mouse oocytes. J Biol Chem 2017; 292:1798-1807.
    [Abstract] [Full Paper]
  • Wang Y, Wu Q, Yang P, Wang C, Liu J, Ding W, Liu W, Bai Y, Yang Y, Wang H, Gao S*, Wang X*. LSD1 co-repressor Rcor2 orchestrates neurogenesis in the developing mouse brain. Nat Commun 2016; 7:10481.
    [Abstract] [Full Paper]
  • Xu H#, Xu K#, He HH, Zang C, Chen CH, Chen Y, Qin Q, Wang S, Wang C, Hu S, Li F, Long H, Brown M*, Liu XS*. Integrative analysis reveals the transcriptional collaboration between EZH2 and E2F1 in the regulation of cancer-related gene expression. Mol Cancer Res 2016;14(2):163-72.
    [Abstract] [Full Paper]
  • Zhang Y#*, Vastenhouw NL#*, Feng J, Fu K, Wang C, Ge Y, Pauli A, van Hummelen P, Schier AF*, Liu XS*. Canonical nucleosome organization at promoters forms during genome activation. Genome Res 2014; 24(2):260-6.
    [Abstract] [Full Paper]
  • Wang J, Lin X, Wang S, Wang C, Wang Q, Duan X, Lu P, Wang Q, Wang C, Liu XS, Huang J*. PHF8 and REST/NRSF co-occupy gene promoters to regulate proximal gene expression. Sci Rep 2014; 4:5508.
    [Abstract] [Full Paper]
  • Wang S, Sun Hanfei, Ma J, Zang C, Wang C, Wang J, Tang Q, Meyer CA, Zhang Y*, Liu XS*. Target analysis by integration of transcriptome and ChIP-seq data with BETA. Nat Protoc 2013; 8:2502-15.
    [Abstract] [Full Paper]